[Biopython-dev] [Bug 3026] Bio.SeqIO.InsdcIO._split_multi_line(): Your description cannot be broken into nice lines!

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3026


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #5 from biopython-bugzilla at maubp.freeserve.co.uk  2010-10-19 10:17 EST -------
(In reply to comment #4)
> I do not know what I would like to happen here in addition to the improved
> error message. Probably not get an error at all and have biopython able to
> cope with these cases as well. I have just asked asimpson at ludwig.org.br
> whether fix of the data in dbEST would be feasible.

The plain text GenBank file from the NCBI is fine (see comment 1), but the
HTML version is not. I don't think this is really a problem with the raw
data...

Anyway, I've just committed a fix which means Biopython will write an over
long line and issue a warning:

http://github.com/biopython/biopython/commit/f25ccef1e07129a377954021e08e980b82b6e795

Marking as fixed.


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