[Biopython-dev] Uniprot parsers

[Renato Alves]

Hi everyone,

With the arrival of the Uniprot XML parser, is the swiss format still
going to be maintained?

I just clashed with a 'swiss' format parsing problem present in the
1.55b release (and previous releases). Seems like the format might have
changed.

One random case is [1] where all of the 2nd and following IDs are
ignored by the parser. In Ensembl, for instance, the parser only
collects the ENST (the 1st) but not the ENSP (2nd) and ENSG (3rd)
identifiers.

Is this a known issue?

Regards,
Renato

[1] http://www.uniprot.org/uniprot/P31946.txt

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