[Biopython-dev] [Bug 3155] Some Phylip tools seem to fail on Jython

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3155





------- Comment #2 from tiagoantao at gmail.com  2010-11-09 09:55 EST -------
(In reply to comment #1)
> What version of Jython?

Jython 2.5.2rc2


> What version of EMBOSS, and the phylipnew package?

EMBOSS 6.0.1
Phylip seems 3.68

> Do these tests pass *on the same machine* if run in normal (C) Python?

Yep. This is the same machine as the one doing integration testing in C-Python

> Alternately, do these four command line examples work when run by hand?

No. I've noticed that the example files do not exist! e.g. Phylip/opuntia.phy
does not exist. Indeed this should not work, I think


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