[Biopython-dev] Bio/cMarkovModelmodule.c

[Michiel de Hoon]

--- On Wed, 11/3/10, Peter <biopython at maubp.freeserve.co.uk> wrote:
> > I put the warning message in MarkovModel.py anyway,
> > since it's very easy to miss if it's in setup.py.
> 
> Do we really need the warning? I guess otherwise people
> using this code
> might notice a drop in performance if they were using our C
> code version,
> updated their Biopython, and then get the Python fallback
> if their NumPy is too old.

We need the warning, otherwise we'd leave the user guessing as to why their code is suddenly slower.

> If we do keep the warning should it be silenced in
> test_MarkovModel.py?

OK I've added this warning.

--Michiel.