[Biopython-dev] Biopython 1.56 release plans

Michiel de Hoon mjldehoon at yahoo.com
Tue Nov 30 08:14:20 EST 2010


OK, I have removed these modules:
  	Bio.Encodings
 	Bio.PropertyManager
 	Bio.Transcribe
 	Bio.Translate
 	Bio.utils

--Michiel.

--- On Fri, 11/26/10, Peter <biopython at maubp.freeserve.co.uk> wrote:

> From: Peter <biopython at maubp.freeserve.co.uk>
> Subject: Re: [Biopython-dev] Biopython 1.56 release plans
> To: "Michiel de Hoon" <mjldehoon at yahoo.com>
> Cc: "Biopython-Dev Mailing List" <biopython-dev at biopython.org>
> Date: Friday, November 26, 2010, 11:25 AM
> On Fri, Nov 5, 2010 at 12:01 PM,
> Peter <biopython at maubp.freeserve.co.uk>
> wrote:
> > On Fri, Nov 5, 2010 at 11:52 AM, Michiel de Hoon
> <mjldehoon at yahoo.com>
> wrote:
> >>
> >> Bio/Transcribe.py
> >> Bio/Translate.py
> >>
> >> These are still imported from
> Bio/Encodings/IUPACEncoding.py, which
> >> is imported from Bio/Alphabet/IUPAC.py. I have no
> idea what this code
> >> is doing. Does anybody know?
> >
> > Ah right - sorry, that had slipped my mind:
> > http://lists.open-bio.org/pipermail/biopython-dev/2010-September/008255.html
> >
> > I had suggested we leave Bio.Transcribe and
> Bio.Translate in for
> > Biopython 1.56 and remove them (and Bio.utils,
> Bio.PropertyManager,
> > and Bio.Encodings.IUPACEncoding) for Biopython 1.57
> 
> Hi Michiel,
> 
> Now Biopython 1.56 is out, would you like to remove those
> modules?
> 
> Thanks
> 
> Peter
> 


      


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