[Biopython-dev] Uniprot XML parser on TrEmbl

[Peter]

On Fri, Nov 26, 2010 at 1:54 PM, Andrea Pierleoni
<andrea at biocomp.unibo.it> wrote:
>
>>> I've checked uniprot_sprot.dat still parses, but haven't tried the
>>> much bigger uniprot_trembl.dat from uniprot_trembl.dat.gz - so
>>> again, would you be able to retest the "swiss" text parser too?
>>
>> I'll test this too and let you know.
>>
>
> Test completed on the .dat file, all entries were parsed without errors.
> This time it took almost 3h but was done on the gzipped file stored in a
> removable 5400rpm hard drive. the XML file was on an SSD so maybe that's
> why it is faster with that parser.
>

Excellent - thanks.

Peter