[Biopython-dev] [Bug 3066] Iterating/looping over colums/rows of a MultipleSeqAlignment

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3066





------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2010-05-14 09:14 EST -------
(In reply to comment #0)
> A related question here is should the columns be returned as strings or as Seq
> objects? Possible implementation to follow as a patch...

The main __getitem__ method has just been changed to return strings as of
Biopython 1.54 (while the beta returned columns as Seq objects):

http://github.com/biopython/biopython/commit/dbf72e19d65d1edd6777bd498306fe34eb4e371e 

Therefore for consistency, any column iterator method should now also return
strings.


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