[Biopython-dev] [Bug 2905] Short read alignment format SAM / BAM

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2905





------- Comment #3 from chapmanb at 50mail.com  2010-05-05 08:57 EST -------
I'd really like to see our support for this re-use the work in the pysam
project. Agreed that both a pure Python implementation of BAM parsing and
Biopython-interoperable objects are useful, and we should either contribute it
as part of pysam or consider discussing a closer collaboration with the pysam
authors.

Biopython should be taking the lead on encouraging better interoperability with
other projects. pysam is useful to me in my work right now, and we should
support that effort. 


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