[Biopython-dev] [Bug 3069] Support for EMBL-like files from IMGT

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3069





------- Comment #20 from laserson at mit.edu  2010-05-18 17:46 EST -------
(In reply to comment #18)
> I see now. If the IGMT have consistent FH and FT lines we can trust, that would
> be quite elegant... on the other hand to fix the nasty locations we are forced
> to subclass parse_features anyway.

My impression so far is that we can trust their feature indentations.  At least
all their FH lines are one of two indentations, and we can measure the
indentation on all the FT lines.  Once we get a parser that generally works,
I'm going to make a list of all the accessions that have actual errors and
submit to IMGT.  In the meanwhile, I'll personally settle for catching those
exceptions and skipping those records.

> Remind me to add your name as a contributor once this gets merged to the trunk.

That's very kind.  I'm glad I can contribute to a worthy and incredibly useful
project. 


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.