[Biopython-dev] [Bug 3069] Support for EMBL-like files from IMGT

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3069





------- Comment #19 from biopython-bugzilla at maubp.freeserve.co.uk  2010-05-18 13:36 EST -------
(In reply to comment #18)
> 
> I've used your regular expression solution in my branch now,
> http://github.com/biopython/biopython
>

Sorry - I pasted the wrong URL, I mean here:
http://github.com/peterjc/biopython/tree/seqio-imgt

I've found an even worse example of partial location example from
http://imgt.cines.fr/download/LIGM-DB/imgt.dat.Z

ID   M97158 IMGT/LIGM annotation : keyword level; RNA; ROD; 1093 BP.
XX
...
XX
FH   Key             Location/Qualifiers (from EMBL) 
FH   
FT   source          1.
FT                   /organism="Mus musculus"
FT   mRNA            join(523.
FT   intron          1.
FT   exon            523.
FT   intron          541.
FT   exon            638.
FT   intron          745.
XX
...

You can see the original at EMBL,
http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&id=M97158&Submit=Go

Or in GenBank format at the NCBI,
http://www.ncbi.nlm.nih.gov/nuccore/200865


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