[Biopython-dev] [Bug 3103] Possibly corrupt - ncbi_taxonomy_mollusca.xml.zip in Tests/PhyloXML

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http://bugzilla.open-bio.org/show_bug.cgi?id=3103





------- Comment #2 from vimalkumarvelayudhan at gmail.com  2010-06-27 12:45 EST -------
The archives were downloaded from 
http://biopython.org/DIST/biopython-1.54.tar.gz
http://biopython.org/DIST/biopython-1.54.zip

I could remove the zip file during the build process and can also patch the
Phylo.Nexus for the next release if you could forward it to me.


(In reply to comment #1)
> Interesting. Where did you get this release of Biopython 1.54? From PyPI, or
> GitHub?
> 
> I downloaded this file from phyloxml.org originally, and haven't changed it.
> This file is used in the unit tests, and Python's zipfile library doesn't seem
> to have any trouble opening it. The 'file' command on Ubuntu 10.04 identifies
> it as:
> "Zip archive data, at least v2.0 to extract"
> 
> It's actually not a very important part of the unit tests anyway, so if it's
> causing you trouble, I could give you a patch to remove this file from the unit
> tests.
> 
> (If you're taking patches, there's a bug in Bio.Phylo's Nexus parsing that I'd
> like to include a fix for, too. It's fixed in Biopython's trunk already, but
> slipped past our release process for v.1.54.)
> 


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