[Biopython-dev] subprocess and calling application wrappers

[Jose Blanca]

On Tuesday 01 June 2010 17:15:03 Peter wrote:
> On Tue, Jun 1, 2010 at 2:23 PM, Brad Chapman <chapmanb at 50mail.com> wrote:
> > Peter;
> >
> >> With the new command line wrappers and the tutorial pushing
> >> users towards using subprocess we've had more queries
> >> about how to use it. The subprocess module itself is rather
> >> scary I guess, and things could be made a lot easier.

We had the same need. We solved it with a call function. You can take a look 
at:

http://github.com/JoseBlanca/franklin/blob/master/franklin/utils/cmd_utils.py

Regards,

-- 
Jose M. Blanca Postigo
Instituto Universitario de Conservacion y
Mejora de la Agrodiversidad Valenciana (COMAV)
Universidad Politecnica de Valencia (UPV)
Edificio CPI (Ciudad Politecnica de la Innovacion), 8E
46022 Valencia (SPAIN)
Tlf.:+34-96-3877000 (ext 88473)