[Biopython-dev] Bio.GFF and Brad's code

[Jose Blanca]

Hi:

I'm doing a pipeline to annotate sequences. I'm writting modules that add 
SeqFeatures and annoations to the sequences. 
Right now I'm storing the result as repr for the SeqRecords, but I would like 
to write gff files at the end. I've read the discussion regarding Brad's code 
and I've found it very interesting.
I need to write those gff files so couldl use Brad's code or my own, but it 
would be great if I could contribute to Biopython at the same time.
At the time being I don't think a consensus about what a SeqFeature should 
represent and how. I think Peter made a proposal about adding a parent and 
children properties, is this a good way to solve the problem? 
Best regards,

-- 
Jose M. Blanca Postigo
Instituto Universitario de Conservacion y
Mejora de la Agrodiversidad Valenciana (COMAV)
Universidad Politecnica de Valencia (UPV)
Edificio CPI (Ciudad Politecnica de la Innovacion), 8E
46022 Valencia (SPAIN)
Tlf.:+34-96-3877000 (ext 88473)