[Biopython-dev] [Bug 2704] Parser for the markx10 alignment format

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2704





------- Comment #5 from biopython-bugzilla at maubp.freeserve.co.uk  2010-01-15 07:38 EST -------
According to the change log for the just released EMBOSS 6.2:

        Alignment output included headers only for EMBOSS-specific
        formats. The headers have been dropped from the FASTA MARKX0
        through MARKX10 formats to allow standard FASTA suite parsers to
        use the EMBOSS versions of these outputs.

See also:
http://lists.open-bio.org/pipermail/emboss-dev/2009-August/000618.html

Fingers crossed this means we will be able to parse their output
with the "fasta-m10" parser in Bio.AlignIO.


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