[Biopython-dev] [Bug 2980] New: Bio.SeqIO can't parse EMBL CONTIG records
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Thu Jan 7 13:11:47 EST 2010
http://bugzilla.open-bio.org/show_bug.cgi?id=2980
Summary: Bio.SeqIO can't parse EMBL CONTIG records
Product: Biopython
Version: Not Applicable
Platform: All
OS/Version: All
Status: NEW
Severity: enhancement
Priority: P2
Component: Main Distribution
AssignedTo: biopython-dev at biopython.org
ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk
While the GenBank parser has been updated to cope with CONTIG records
(using an UnknownSeq object), this has not been done for the EMBL parser.
As an example test case, consider:
ftp://ftp.ebi.ac.uk/pub/databases/embl/release/rel_con_hum_01_r102.dat.gz
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