[Biopython-dev] [Bug 3000] Could SeqIO.parse() store the whole, unparsed multiline entry?

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3000





------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2010-02-01 06:26 EST -------
(In reply to comment #1)
> (In reply to comment #0)
> > Still, I suspect this will
> > reformat the entry (currently I see trailing dot removed from KEYWORDS, no
> > REFERENCE, AUTHORS, TITLE, JOURNAL, PUBMED; and FEATURES.source being
> > re-ordered).
> 
> Yes, using Bio.SeqIO to read/write a GenBank record will give you (slightly)
> different output. We do not guarantee a 100% round trip (even on simpler
> formats like FASTA). Even little things like line wrapping would make this
> very difficult.
> 
> Regarding GenBank KEYWORDS, please file a bug.

Don't worry about reporting a bug for this, I've just fixed the missing period
for KEYWORDS:

http://github.com/biopython/biopython/commit/5a87b070fc1f4fb911d4cf8a2e53c330cd6bd83d

Peter


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