[Biopython-dev] [Bug 3009] New: Check the FASTA m10 alignment parser works with FASTA36

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3009

           Summary: Check the FASTA m10 alignment parser works with FASTA36
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Unit Tests
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk


Bill Pearson has just announced the release of FASTA36:
http://faculty.virginia.edu/wrpearson/fasta/fasta36/

>From his email,
> This version is a major update from FASTA version 35.
> It's main new feature is the ability to report all
> statistically significant alignments between a query
> and library sequence (equivalent to BLAST's multiple
> HSPs).  All previous versions of the FASTA program
> reported only the best alignment between the query
> and library sequence, a serious shortcoming when
> comparing a query protein to a multi-exon gene or
> multi-domain protein.

We need to check the FASTA36 -m 10 output, add this to
our unit tests, and update our parser as required.


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