[Biopython-dev] [Bug 2294] Writing GenBank files with Bio.SeqIO

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2294





------- Comment #17 from biopython-bugzilla at maubp.freeserve.co.uk  2010-02-01 08:35 EST -------
(In reply to comment #16)
> 
> > * Writing references
> 
> Not done yet, but for my personal needs this is low priority.

Reference output in GenBank format from SeqIO just committed on github,
http://github.com/biopython/biopython/commit/42707bda738d0239a9ff85a39c39c89c8024549d

> > * Extending to cover writing EBML files
> 
> Not done yet, but should be comparatively straight forward. Let's track this
> possible enhancement on a separate bug.

EMBL output in SeqIO was done a while ago and was included in Biopython 1.52
(although we don't yet write references in EMBL output).

Things still to do on GenBank output include better handling of the LOCUS
line, such as the data division. See also Bug 2578 for the molecule type.


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