[Biopython-dev] [Bug 3096] PPBuilder build_peptides bugs

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Aug 13 17:52:49 UTC 2010


------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2010-08-13 13:52 EST -------
Hi Siong,

I've been going over your example again (and adding some doctests to
Bio/PDB/Polypeptide.py as well).

It seems to me that in order to show this "bug" you have had to override the
builder class' private _accept() method. If in doing so you break the default
build_peptides() method, then you should probably also override that too.

Can you show a problem without subclassing the builder object?

There may be scope for enhancement, but you haven't convinced me there is a
bug here.


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