[Biopython-dev] [Bug 3100] Bio.PDB.ResidueDepth distance calculation error

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3100


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #1 from biopython-bugzilla at maubp.freeserve.co.uk  2010-08-13 12:50 EST -------
Hi Andres,

Installing MSMS was a pain, still not sure what the best way to deal with the
atmtypenumbers file is for installation. And I found the nawk versus awk bug:
http://mgldev.scripps.edu/pipermail/msms/2006q1/000006.html

But yes, I can confirm the bug and the fix. Fix checked in:
http://github.com/biopython/biopython/commit/aaac859df5e8d6a6b3a1304ad8b5c7c6163c4433

Thank you for your contribution,

Peter

P.S. Your example's import statements were incomplete, e.g.

from Bio.PDB import PDBParser
from Bio.PDB.ResidueDepth import get_surface, min_dist


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