[Biopython-dev] Newbler ACE file to SAM?

Peter biopython at maubp.freeserve.co.uk
Wed Aug 4 17:03:19 UTC 2010


On Wed, Aug 4, 2010 at 6:00 PM, Kevin Jacobs <jacobs at bioinformed.com>
<bioinformed at gmail.com> wrote:
> On Wed, Aug 4, 2010 at 12:35 PM, Nick Loman <n.j.loman at bham.ac.uk> wrote:
>> [...]
>> Not sure if there's scope for tighter integration to Biopython but will
>> leave that to you experts!
>>
>>
> Unlike much of my other code, there is no dependency on pysam, so there is
> no reason why biopython couldn't adopt my converter -- I'd certainly be
> happy to donate it.   I'm just not sure if there is a good place for it.

Is it a stand alone script using Biopython to parse ACE and SFF?
Maybe we can include it in the scripts folder - at the very least you could
add a link to it on http://www.biopython.org/wiki/Scriptcentral

Peter




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