[Biopython-dev] [Bug 3127] Set SeqRecord description in SeqIO "tab" parser

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Aug 2 18:50:50 UTC 2010


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
            Summary|SeqIO.write appends text to |Set SeqRecord description in
                   |fasta comments              |SeqIO "tab" parser

------- Comment #1 from biopython-bugzilla at maubp.freeserve.co.uk  2010-08-02 14:50 EST -------
The problem isn't really in Bio.SeqIO.write(), it is with the SeqRecord
default and/or the "tab" parser. Retitling bug...

In the "tab" file format there is no description, so you are getting the
SeqRecord's default description. We'd recently talked about making this
just an empty string, alternatively and with less risk the "tab" parser
could set the description to "" explicitly.

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