[Biopython-dev] 4/17 BioStar - Biopython Questions

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1. Does Biopython parse blast -m8 or -m9 (aka blasttable)?
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April 16, 2010 at 10:54 AM

I am getting the following error when I try -m9

  File "parseBlast.biopython.py", line 5, in ?
    blast_record = blast_parser.parse(result_handle)
  File "/src/biopython-1.52/build/lib.linux-x86_64-2.4/Bio/Blast/NCBIStandalone.py", line 763, in parse
    self._scanner.feed(handle, self._consumer)
  File "/src/biopython-1.52/build/lib.linux-x86_64-2.4/Bio/Blast/NCBIStandalone.py", line 96, in feed
    self._scan_header(uhandle, consumer)
  File "/src/biopython-1.52/build/lib.linux-x86_64-2.4/Bio/Blast/NCBIStandalone.py", line 213, in _scan_header
    raise ValueError("Invalid header?")
ValueError: Invalid header?

http://biostar.stackexchange.com/questions/760/does-biopython-parse-blast-m8-or-m9-aka-blasttable

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