[Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3046





------- Comment #8 from biopython-bugzilla at maubp.freeserve.co.uk  2010-04-08 18:14 EST -------
(In reply to comment #6)
> In many cases, the phyloXML spec doesn't currently promise enough to make nice
> shortcuts work without the possibility of breaking in the future. For example,
> check out this new demo with *two* bootstrap values for every clade:
> http://www.phylosoft.org/archaeopteryx/examples/data/multiple_supports.xml

I've actually done something like that a few years back, using bootstrap
values from two different tree building tools (NJ and ML I think). I had
to do this by loading two Newick files of the same tree with different
bootstraps - quite messy!


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