[Biopython-dev] [Bug 3069] New: More robust feature parser for GenBank/EMBL records

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3069

           Summary: More robust feature parser for GenBank/EMBL records
           Product: Biopython
           Version: 1.54b
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: laserson at mit.edu
                CC: laserson at mit.edu


We recently made a modification to allow for over-indented features to be
processed correctly (to handle IMGT records).  However, this only works if the
feature keys are within the INSDC established guidelines, which is not always
the case with IMGT.  This specifically causes a problem for the location lines
of features.  I will shortly upload a patch which corrects this problem, by
processing only the first line of a feature using split(), rather than the
hardcoded distances.  Are there any objections to this?


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.