[Biopython-dev] [Bug 3062] GenBank/EMBL parser breaks when features have no qualifiers

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3062





------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2010-04-26 13:52 EST -------
I've just tried the file on attachment 1843 on Mac and Linux and it parses
fine (using the latest Biopython code). However, I was sure I was able to
reproduce this earlier (on Linux), but I forget now where I got the example
file from (this was before Uri uploaded this attachment).

I've been using this (and variants of this):

from Bio import SeqIO
record = SeqIO.read(open("A03907.embl"), "embl")

In any case, the assert check looks sensible - the method parse_feature should
be given a single feature, so any error is happening further up - probably in
the parse_features method.

I'm confused right now.

Peter


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