[Biopython-dev] [Bug 2910] Bio.PDB build_peptides sometimes gives shorter peptide sequences than expected

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2910





------- Comment #4 from schafer at rostlab.org  2009-09-23 11:47 EST -------
Peter,

yes, indeed, I had a couple of problematic pdb ids. As soon as I find the time,
I'll take a look at it and post them here. It's easy to do this. What I did is,
I parsed the structures through the dssp structure assignment tool and compared
the obtained sequence with that obtained from the Bio.PDB parser. Background: I
wanted to map the sequence that dssp sees to atomic coordinates.


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