[Biopython-dev] [Bug 2931] Error in PDBList() code for get_all_obsolete

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2931


TallPaulInJax at yahoo.com changed:

           What    |Removed                     |Added
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                 CC|                            |TallPaulInJax at yahoo.com




------- Comment #2 from TallPaulInJax at yahoo.com  2009-10-21 18:39 EST -------
Here is some test code:

from Bio.PDB import PDBList
p = PDBList()
obsolete = p.get_all_obsolete()
print obsolete

Printout is below: these should be full four digit codes, but the first digit
is missing and the space after the last char is instead at the end.['16l ',
'25d ', '4ps ', '51c ', '56b ', '79l ', 'a0v ', 'a0w ', 'a0x ', 'a0y ', 'a10 ',
'a1y ', 'a6o ', 'a9d ', 'a9k ', 'aa8 ', 'aak ', 'abh ', 'abk ', 'abm ', 'abp ',
'abx ', 'ace ', 'ack ', 'act ', 'ada ', 'adh ', 'adk ', 'adm ', 'afg ', 'afn ',
'ak3 ', 'alo ', 'alp ', 'alr ', 'am3 ', 'amg ', 'amv ', 'anh ', 'ape ', 'app ',
'apr ', 'ar3 ', 'ara ', 'arn ', 'as9 ', 'asi ', 'at7 ', 'atc ', 'atq ', 'aub ',
'axf ', 'ayh ', 'ayq ', 'az9 ', 'aza ', 'b1w ', 'b2n ', 'b3m ', 'b5c ', 'b6n ',
'b6o ', 'b7c ', 'b8b ', 'b91 ', 'baa ', 'baq ', 'bcl ', 'bdp ', 'ber ', 'bfl ',
'bgh ', 'bgr ', 'bjl ', 'bkq ', 'bl2 ', 'blm ', 'blw ', 'bme ', 'bmi ', 'bmy ',
'bn2 ', 'bnh ', 'bqv ', 'br7 ', 'buk ', 'bur ', 'bv0 ', 'bv5 ', 'bv6 ',


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