[Biopython-dev] [Bug 2927] Problem parsing PSI-BLAST plain text output with NCBStandalone.PSIBlastParser

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2927


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
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             Status|RESOLVED                    |REOPENED
         Resolution|WORKSFORME                  |




------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2009-10-15 11:17 EST -------
After further discussion on the mailing list, it is still not clear
what triggers these "Query: 0" lines, but it affects multiple versions
of blastpgp and can apparently be seen at the command line (which means
it isn't Biopython's fault in any way).

We should update Bio.Blast.NCBStandalone.PSIBlastParser to cope
(probably by ignoring the "Query: 0" lines).

Peter


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