[Biopython-dev] [Bug 2954] New: xbbtools and SeqGui still using Bio.Translate and Bio.Transcribe

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Nov 25 17:18:15 UTC 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2954

           Summary: xbbtools and SeqGui still using Bio.Translate and
                    Bio.Transcribe
           Product: Biopython
           Version: 1.51
          Platform: PC
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Other
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk


Scripts/SeqGui/SeqGui.py is still using Bio.Translate and Bio.Transcribe which
were deprecated in Biopython 1.51.

Using Bio.Seq instead should be trivial, except for back-translation (which
could just be removed from the SeqGui tool).


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