[Biopython-dev] Updating http://biopython.open-bio.org/SRC/biopython/

Brad Chapman chapmanb at 50mail.com
Tue Nov 17 13:12:44 UTC 2009


Hi Peter;
Do we need to keep replicating this now that we've got GitHub? That
gives us anonymous checkouts of the code, and on demand tarball
generation. It seems like we could save a few cycles and worries by
eliminating this.

Brad

> Back when Biopython used CVS, we had an hourly checkout of
> the code published here:
> http://www.biopython.org/SRC/biopython/
> http://biopython.open-bio.org/SRC/biopython/
> 
> I did ask how this was setup (which username etc) but no one got
> back to me. In any case, this can now be turned off - along with
> making the Biopython CVS read only (OBF support call #857).
> 
> I've managed to get this working again from the github repository,
> although the route isn't ideal (and is all running under my username):
> 
> (1) At quarter past the hour, a cron job on dev.open-bio.org does
> a "git pull" to update a local copy of the repository to that on github.
> This doesn't need any passwords.
> 
> (2) At 25mins past the hour, a cron job on www.biopython.org does
> an rsync to get a copy of the repository from dev.open-bio.org (using
> an SSH key for access).
> 
> I tried having a single job running on dev.open-bio.org to push the
> files to www.biopython.org but the host policies seem to block that.
> 
> It would be simpler to have everything done on www.biopython.org,
> which would require git to be installed on that machine. This would
> avoid any SSH security problems. Does that seem like a better idea?
> 
> Thanks,
> 
> Peter
> _______________________________________________
> Biopython-dev mailing list
> Biopython-dev at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biopython-dev



More information about the Biopython-dev mailing list