[Biopython-dev] Questions on StructureBuilder, MMCIFParser, and MMCIFlex

Peter biopython at maubp.freeserve.co.uk
Tue Nov 3 21:54:15 UTC 2009


On Tue, Nov 3, 2009 at 5:34 PM, Paul B <tallpaulinjax at yahoo.com> wrote:
>>Are you sure it should it be 1 and not 0? Remember, Python counts from zero.
>
> If the MODEL record in the .ent record says MODEL 1, should
> biopython report it as 0? In PDBParser, the code is as follows:
> ...

If for the PDB parser Thomas already chose to report the model
as 1, then to yes you are right - to be consistent the CIF parser
should do the same as the PDB parser.

Peter



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