[Biopython-dev] [Bug 2731] Adding .upper() and .lower() methods to the Seq object

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Nov 3 12:19:08 EST 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2731





------- Comment #5 from biopython-bugzilla at maubp.freeserve.co.uk  2009-11-03 12:19 EST -------
Created an attachment (id=1389)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1389&action=view)
Patch to Bio/Seq.py

Compared to the earlier patch, this takes the less invasive approach of only
editing Bio/Seq.py (covering both Seq and UnknownSeq, with doctests), but has
the downside that it is not easy to deal with gapped alphabets etc nicely.

Adding (private) upper/lower methods as outlined in the earlier patch does seem
a better plan.


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