[Biopython-dev] sff reader

[Senthil Palanisami]

You didn't sound particularly grumpy, I am just aware of the annoyances
related to people too lazy to do a quick search of through a mailing list
before spamming.

I pulled 'CA' straight out of a wgs assembler program:
http://apps.sourceforge.net/mediawiki/wgs-assembler/index.php?title=Formatting_Inputs#sffToCA
I think 'frg' is the real file format name.

--
Senthil Palanisami
http://spenthil.com


On Sat, May 23, 2009 at 4:28 AM, Peter <biopython at maubp.freeserve.co.uk>wrote:

> On Sat, May 23, 2009 at 2:48 AM, Senthil Palanisami <spenthil at gmail.com>
> wrote:
> > Sorry, I only recently joined this list - should have gone through the
> > archives first.
>
> Don't worry - and if I sounded grumpy, sorry - I was up late last night.
>
> > I have done some minimal SFF tweaking, but only by first converting them
> > to CA format.
>
> What do you mean by CA format? I don't recall seeing that abbreviation
> before.
>
> > No paired end reads yet, but I do know my PI wants me to start looking
> > at some in the next month or two.
>
> I haven't had any paired end 454 reads to work with personally, but I'm
> sure there are some examples available online somewhere.
>
> Peter
>