[Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed May 20 21:07:08 UTC 2009


------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2009-05-20 17:07 EST -------
(In reply to comment #0)
> Biopython 1.50 (also 1.50b it's the same code)
> python2.4 or python2.5
> postgresql 8.3
> BioSQL Schema 1.0.1

What version of psycopg are you using? i.e. The python library for talking to

Have you tried running Biopython's BioSQL unit tests?  You'll need to configure
your settings in setup_BioSQL.py first.

If that looks good could you try updating to the latest Biopython from CVS and
retesting? I've added a basic check in test_BioSQL.py for duplicated entries
(using a GenBank file) which works on my machine using MySQL.

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