[Biopython-dev] [Bug 2826] SeqRecord dbxrefs not written to GenBank by SeqIO

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2826





------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2009-05-12 12:11 EST -------
(In reply to comment #2)
> Thank you. I'm new to BioPython.
> 
> The goal was to take some whole-genome sequence (which isn't in Genbank) and
> attach a taxon to it, in order that it be written to a BioSQL database.

For this example you don't need to write out a GenBank file at all (which is
what this bug was about).  See my email on the mailing list for details:

http://lists.open-bio.org/pipermail/biopython/2009-May/005154.html
and sent in error to the dev list:
http://lists.open-bio.org/pipermail/biopython-dev/2009-May/006028.html

I am leaving this bug open for relevant dbxrefs entries not currently recorded
when writing GenBank files with Bio.SeqIO (GI number which goes on the VERSION
line, and genome projects on the PROJECT / DBLINK line).

Peter


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