[Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2822





------- Comment #9 from biopython-bugzilla at maubp.freeserve.co.uk  2009-05-04 13:49 EST -------
(In reply to comment #8)
> Leaving this bug open to cover dealing with "switch" arguments like -kimura in
> clustalw, where it makes sense to treat the value as a boolean (see dev mailing
> list).

Done in CVS, I think.  Next, more test and documentation...

Checking in Bio/Application/__init__.py;
/home/repository/biopython/biopython/Bio/Application/__init__.py,v  <-- 
__init__.py
new revision: 1.16; previous revision: 1.15
done
Checking in Bio/Align/Applications/_Clustalw.py;
/home/repository/biopython/biopython/Bio/Align/Applications/_Clustalw.py,v  <--
 _Clustalw.py
new revision: 1.6; previous revision: 1.5
done
Checking in Bio/Align/Applications/_Mafft.py;
/home/repository/biopython/biopython/Bio/Align/Applications/_Mafft.py,v  <-- 
_Mafft.py
new revision: 1.5; previous revision: 1.4
done
Checking in Bio/Align/Applications/_Muscle.py;
/home/repository/biopython/biopython/Bio/Align/Applications/_Muscle.py,v  <-- 
_Muscle.py
new revision: 1.7; previous revision: 1.6
done
Checking in Bio/Align/Applications/_Prank.py;
/home/repository/biopython/biopython/Bio/Align/Applications/_Prank.py,v  <-- 
_Prank.py
new revision: 1.5; previous revision: 1.4
done
Checking in Tests/test_Clustalw_tool.py;
/home/repository/biopython/biopython/Tests/test_Clustalw_tool.py,v  <-- 
test_Clustalw_tool.py
new revision: 1.14; previous revision: 1.13
done
Checking in Tests/test_Muscle_tool.py;
/home/repository/biopython/biopython/Tests/test_Muscle_tool.py,v  <-- 
test_Muscle_tool.py
new revision: 1.8; previous revision: 1.7
done
Checking in Tests/test_Prank_tool.py;
/home/repository/biopython/biopython/Tests/test_Prank_tool.py,v  <-- 
test_Prank_tool.py
new revision: 1.6; previous revision: 1.5
done


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