[Biopython-dev] [Bug 2837] Reading Roche 454 SFF sequence read files in Bio.SeqIO

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2837





------- Comment #1 from biopython-bugzilla at maubp.freeserve.co.uk  2009-05-22 14:39 EST -------
Created an attachment (id=1303)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1303&action=view)
Bio/SeqIO/RocheSffIO.py

This is a rough SeqIO parser constructing SeqRecord objects using a parser
contributed by Jose Blanca. Additional work would be required for paired end
reads - and even more work to be able to write out these files.

Potentially Jose's parser could be exposed as a public module under
Bio.Sequencing, but here is it just two private classes.


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