[Biopython-dev] [Bug 2815] Bio.Application command line interfaces

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2815





------- Comment #32 from cymon.cox at gmail.com  2009-05-12 13:33 EST -------
Added PROBCONS and TCOFFEE command line interfaces and unittests.

The TCOFFEE commadline implements a very restricted set of options (just those
Brad attached). 

Also added white list of known headers to AlignIO/ClustalwIO.py:97 - the
PROBSCONS unittest will fail without this alteration.

On http://github.com/cymon/biopython-github-master/tree/applic-int
C.


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