[Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2822


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
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Attachment #1290 is|0                           |1
           obsolete|                            |




------- Comment #6 from biopython-bugzilla at maubp.freeserve.co.uk  2009-05-04 10:07 EST -------
Created an attachment (id=1291)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1291&action=view)
Patch to add keyword arguments, properties and __repr__ to command line
wrappers

As in previous patch but with support for clearing parameters by "deleting" the
property, and some basic doctests in Bio.Application.

Still need to co-ordinate with Cymon to give the Muscle wrapper a valid python
identifier as an alias for the -in argument, e.g. "input", because we can't use
just "in" as a property or keyword argument.


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