[Biopython-dev] [Bug 2759] Unit test for Bio.PDB.HSExposure

[Eric Talevich]

On Sat, Mar 21, 2009 at 10:32 AM, <bugzilla-daemon at portal.open-bio.org>wrote:

> http://bugzilla.open-bio.org/show_bug.cgi?id=2759
>
>
> ------- Comment #9 from dalloliogm at gmail.com  2009-03-21 10:32 EST -------
> (In reply to comment #8)
> > Marco & Peter, have either of you applied these patches to a git branch
> yet? My
> > branch for Bug 2754 and related changes also converts test_PDB.py to
> unittest.
> > (I silence the warnings by calling warnings.simplefilter('ignore') in the
> setUp
> > method.) I'd like to try cherry-picking this commit if it's available on
> > github.
>
> ok... Is your branch this one:
> -
>
> http://github.com/etal/biopython/commit/65f5cf9fa8d6d63976b0942e00bd9aecef7e4197
> ?
>
>
> This was my proposal:
> -
>
> http://github.com/dalloliogm/biopython/blob/alternative-pdb-exposure-test/Tests/test_PDBexposure.py
>
>
> I have structured the unittest in a different way, so every test case
> represents a pdb file with some known values for PDB exposure etc..: but
> the
> result should be the same.
>
>

Oh, I see now that these are meant to be separate files. Yes, that's my
branch. Perhaps test_PDB.py should be renamed to test_PDBParser.py, and the
NeighborSearch test moved elsewhere. In that case, there's no merging
problem here, and the only change needed in test_PDBexposure.py is to
silence the warnings... right?