[Biopython-dev] [Bug 2767] Bio.SeqIO support for FASTQ and QUAL files

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2767


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
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Attachment #1251 is|0                           |1
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------- Comment #9 from biopython-bugzilla at maubp.freeserve.co.uk  2009-03-05 12:54 EST -------
Created an attachment (id=1258)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1258&action=view)
Read/write support for FASTQ and QUAL files, using the letter_annotations dict  

Small update to earlier version, with minor comment changes.

Also includes explicit rounding of scores to the nearest integer when writing
out PHRED scores in Solexa format (and vice versa).  This conversion still
needs verifying against real world examples.

I've been testing with real world PHRED based files only so far.


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