[Biopython-dev] [Bug 2781] New: Bio.PDB Structure instances cannot be deepcopied
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Thu Mar 5 12:31:50 UTC 2009
http://bugzilla.open-bio.org/show_bug.cgi?id=2781
Summary: Bio.PDB Structure instances cannot be deepcopied
Product: Biopython
Version: 1.49
Platform: PC
OS/Version: Linux
Status: NEW
Severity: minor
Priority: P3
Component: Main Distribution
AssignedTo: biopython-dev at biopython.org
ReportedBy: klaus.kopec at tuebingen.mpg.de
For some reason, copy.deepcopy() of a Structure instance results in:
Exception RuntimeError: 'maximum recursion depth exceeded while calling a
Python object' in <type 'exceptions.AttributeError'> ignored
for most PDB files I tried.
Maybe implementing some __deepcopy__ methods might help, but I am unsure, as I
did not perform profound research concerning this bug.
My system: Kubuntu 8.10 64-Bit, Python 2.6.1
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