[Biopython-dev] [Bug 2867] New: Bio.PDB.PDBList.update_pdb calls invalid os.cmd
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Tue Jun 30 17:13:29 UTC 2009
http://bugzilla.open-bio.org/show_bug.cgi?id=2867
Summary: Bio.PDB.PDBList.update_pdb calls invalid os.cmd
Product: Biopython
Version: 1.51b
Platform: PC
OS/Version: Linux
Status: NEW
Severity: normal
Priority: P2
Component: Main Distribution
AssignedTo: biopython-dev at biopython.org
ReportedBy: mlrodrigues at igc.gulbenkian.pt
As listed in the traceback, this module tries to use an invalid function from
the os module.
Traceback (most recent call last):
File "update_pdb.py", line 33, in <module>
update(pdblist, my_try)
File "update_pdb.py", line 27, in update
x.update_pdb()
File "/usr/lib/pymodules/python2.5/Bio/PDB/PDBList.py", line 280, in
update_pdb
os.cmd('mv %s %s'%(old_file,new_file))
AttributeError: 'module' object has no attribute 'cmd'
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