[Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2833





------- Comment #24 from cymon.cox at gmail.com  2009-06-03 18:02 EST -------
Ive added a patch against biopython on GitHub.

I hope it address all the points made so far... it now passes all tests in
test_BioSQL.py (although Ive not added more).

One thing we've not yet discussed is the other PostgreSQL driver PyGresql. It
appears that the project is still active and I was able to apt-get a Ubuntu
package. It failed the tests miserably because it doesn't support autocommit().
Even if it can can be made to work it will obviously be prone to the RULES
issue. Presumably, no one is actually using PyGresql (or at least hasnt updated
biopython for some time). I'll open a bug.

Also, Ive added a create_database() in a setUp() to the ClosedLoopTest unittest
case because if this suite is called first (as it is for me - what actually
governs which unittests are called first?) then if a test database is missing
the suite is going to fail.

C.


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