[Biopython-dev] [Bug 2826] SeqRecord dbxrefs not written to GenBank by SeqIO

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2826


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2009-06-03 12:36 EST -------
As of Bio/SeqIO/InsdcIO.py CVS revision 1.15, a SeqRecord's dbxrefs are
recorded under the DBLINK lines when writing a GenBank file with Bio.SeqIO.

Note that the code does not (currently) restrict this to the two database cross
references the NCBI currently use for this field, e.g. "Project:28471" and
"Trace Assembly Archive:123456", anything in the dbxrefs list is recorded.

Marking this bug as fixed.

Note if you want to test this, a clean CVS/git checkout would be advised
(rather than trying to update individual files only).

Peter


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