[Biopython-dev] [Bug 2704] Parser for the markx10 alignment format

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2704





------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2009-07-21 09:25 EST -------
I've started a conversation with Peter Rice at EMBOSS about making needle and
water output more FASTA like when using the markx10 format (and related FASTA
mimicking output modes). See:

http://lists.open-bio.org/pipermail/emboss-dev/2009-July/000583.html

Later cross posted to Biopython-dev as well:
http://lists.open-bio.org/pipermail/biopython-dev/2009-July/006425.html

Hopefully the EMBOSS markx10 output will in future be close enough to the FASTA
-m 10 output that Biopython will only need a single parser to read both.

Peter


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