[Biopython-dev] [Bug 2874] New: invalid class on warning module
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Tue Jul 7 16:38:08 UTC 2009
http://bugzilla.open-bio.org/show_bug.cgi?id=2874
Summary: invalid class on warning module
Product: Biopython
Version: 1.51b
Platform: PC
OS/Version: Linux
Status: NEW
Severity: normal
Priority: P2
Component: Main Distribution
AssignedTo: biopython-dev at biopython.org
ReportedBy: mlrodrigues at igc.gulbenkian.pt
/usr/lib/pymodules/python2.5/Bio/PDB/PDBList.py:151: UserWarning: retrieving
index file. Takes about 5 MB.
warnings.warn("retrieving index file. Takes about 5 MB.")
Traceback (most recent call last):
File "get_pdb_structures.py", line 23, in <module>
get(pdblist, f, my_try)
File "get_pdb_structures.py", line 16, in get
x.download_entire_pdb(listfile=f)
File "/usr/lib/pymodules/python2.5/Bio/PDB/PDBList.py", line 288, in
download_entire_pdb
for pdb_code in entries: self.retrieve_pdb_file(pdb_code)
File "/usr/lib/pymodules/python2.5/Bio/PDB/PDBList.py", line 237, in
retrieve_pdb_file
RuntimeError)
File "/usr/lib/python2.5/warnings.py", line 32, in warn
assert issubclass(category, Warning)
AssertionError
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