[Biopython-dev] [Bug 2874] New: invalid class on warning module

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2874

           Summary: invalid class on warning module
           Product: Biopython
           Version: 1.51b
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: mlrodrigues at igc.gulbenkian.pt


/usr/lib/pymodules/python2.5/Bio/PDB/PDBList.py:151: UserWarning: retrieving
index file. Takes about 5 MB.
  warnings.warn("retrieving index file. Takes about 5 MB.")
Traceback (most recent call last):
  File "get_pdb_structures.py", line 23, in <module>
    get(pdblist, f, my_try)
  File "get_pdb_structures.py", line 16, in get
    x.download_entire_pdb(listfile=f)
  File "/usr/lib/pymodules/python2.5/Bio/PDB/PDBList.py", line 288, in
download_entire_pdb
    for pdb_code in entries: self.retrieve_pdb_file(pdb_code)
  File "/usr/lib/pymodules/python2.5/Bio/PDB/PDBList.py", line 237, in
retrieve_pdb_file
    RuntimeError)
  File "/usr/lib/python2.5/warnings.py", line 32, in warn
    assert issubclass(category, Warning)
AssertionError


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