[Biopython-dev] GSoC Weekly Update 7: PhyloXML for Biopython
Eric Talevich
eric.talevich at gmail.com
Mon Jul 6 11:06:47 EDT 2009
Hi all,
Previously (June 29--July 3) I:
- Wrote serialization methods for each class, matching Parser
- Also profiled the writer
- Caught up on documentation -- http://www.biopython.org/wiki/PhyloXML
This week (July 6--10) I will:
- Address comments from last week's code/doc review
- Enable Pythonic syntax sugar (__getitem__, __contains__, override
__str__)
- Unit tests for new code
- Identify more Biopython objects to reuse or export to (improve the
SeqRecord conversion)
- Look specifically at interoperating with Nexus, Newick trees
- Fill out the midterm evaluation
Cheers,
Eric
http://github.com/etal/biopython/tree/phyloxml/Bio/PhyloXML
https://www.nescent.org/wg_phyloinformatics/PhyloSoC:Biopython_support_for_parsing_and_writing_phyloXML
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